PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000145.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 226aa    MW: 23628.9 Da    PI: 6.2554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000145.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000754668123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C+k F +k  L  H++ H
  Itr_sc000145.1_g00005.1 46 FCCKYCDKKFCSKQALGGHQNAH 68
                             78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-54574No hitNo description
PROSITE profilePS5015711.0944673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804768IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAAEAIAKIE ELIKVQEVGE GDLQVGAAAG GQSGEDSPAP APGPDFCCKY CDKKFCSKQA  60
LGGHQNAHKM ERDMEKNAKK KNEPRGGFMD YGFLHPRFLC SPLASFPPLP GGGQANNWYQ  120
AAVAAAKPPC FLPGNPIPSP EIPAARPPFA FPFPPAVGNG SLLAQVSPPP AVIFPGRGNA  180
FPGGSVPANN SPVTPIRPAS MVINSNAMNT PEMNEEDGGL DLTLRL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13342714